4. Equilibrium and MHD Stability workflow (EQSTABIL)

4.1. Workflow rationale

The EQSTABIL workflow is a Kepler workflow aimed at performing linear MHD stability analysis of tokamak plasma equilibria for a single or multiple toroidal mode numbers when executed. The high resolution equilibrium actors consider axisymmetric toroidal static plasmas with isotropic pressure and the linear MHD stability models stem from single fluid ideal/resistive MHD with compressibility.

The workflow is meant for straightforward stability calculations of any plasma scenario, reading from a pre-existent WPCD database shot/run/time entry. Therefore,

  • It does not read from experimental databases storing locally processed plasma equilibrium e.g. PPFs (JET) or shotfiles (AUG). These can be fetched using the several methods developed under the EWE1 thrust of WPCD.

  • Alternatively the equilibrium IDS could be the output of another workflow e.g. EQRECONSTRUCT or ETS.

  • It is not meant for parametric studies in a single workflow execution e.g. process several time slices or scan over resistive wall position or number of poloidal harmonics. Dedicated runs for such cases are necessary, storing each run on a dedicated output shot/run_out database entry. The workflow may be subject to upgrades/revisions to accomodate new features that facilitate/enhance user experience so stay tuned for News and Recent activity.

  • The workflow design facilitates the integration of a variety of plasma equilibrium and stability codes, all using the same input data from a user defined IMAS database. In addition, during all workflow stages (including initialization and finalization), the modeling data are cast under the same conceptual data bundling as used by the ETS, HCD and EQRECONSTRUCT workflow. This deliberate choice greatly facilitates the interfacing to any of such workflows.

4.2. Workflow organization & design

The top level layout of the workflow is shown below.

_images/equstabil_1.png

The workflow is organised in four sequential steps :

4.2.1. Initialization

Composite actor used to initialize the workflow. It reads from the IMAS database that is specified by local variables (user, device, shot, run_in) and for the closest time sample to local variable time . If the user reads the input data from some other user database, the output data will however be written on his/her own database with shot/run_out id.

-> The workflow local variable device must be the same as the environment variable TOKAMAKNAME. In case the two do not match the workflow stops execution. The user must close the workflow, set imasdb with the correct device name and run the workflow.

-> Validity checks (void/not void) are made on the input equilibrium and core_profile IDSs (MARSGW actor can use core_profile for density profile). If the equilibrium IDS is not considered valid the workflow stops. If the core_profile IDS is not considered valid, the workflow continues to run but the user can still have the option to stop it before executing the chosen MHD code.

At the exit of the Composite actor, a Plasma_reference bundle (list of Kepler variables, mimicking the ETS bundle is returned. This facilitates the future coupling of the workflow to the ETS.

4.2.2. FixedBndCode

Composite actor that prepares/calculates the equilibrium to be passed later to the MHD stability codes. This composite actor is composed of 3 main steps:

_images/equstabil_2.png

4.2.2.1. Redefining the plasma boundary (Cutoff)

This is deemed necessary when the input equilibrium (reconstructed/predictive equilibrium) as a separatrix as plasma boundary since at this moment none of the flux coordinates based equilibrium codes handles/returns plasmas with a separatrix.

If the input equilibrium does not contain a Psi(R,Z) equilibrium mapping the cut-off is not possible and thus the workflow execution will be stopped.

Redefining the plasma boundary is done by setting cut_eq: yes and places the new plasma boundary at a flux surface corresponding to cut_off (in percentage) of the input boundary flux.

The plasma profiles are also cut-off accordingly. An equilibrium bundle exits the actor containing occurrence=1 for the cut-off input equilibrium and occurrence=2 for the original equilibrium. If cut_off:no then both occurrences contain the original equilibrium.

A plot of the original + cut_off equilibrium summary is shown. Closing the plot window leads to the second stage.

4.2.2.2. Calculation of Equilibrium (Fixbndequil)

Calculation of the high resolution equilibrium with 3 possible codes (CAXE, CHEASE, HELENA). The cut-off equilibrium (or original one) is passed to the equilibrium codes. The output HR equilibrium is added to the equilibrium bundle such that in the end one has occurrence=0 for the HR, occurrence=1 for the cut-off input equilibrium (or the original if not cut_off is requested) and occurrence=2 for the original equilibrium.

4.2.2.3. Visualization (Visual)

Visualization part. This part plots the (R,Z) flux map of the HR equilibrium and the most relevant profiles. The figures are saved automatically on closing the windows at the path indicated in the top level accordingly Kepler variable.

4.2.3. StabCode

_images/equstabil_3.png

Composite actor for the MHD stability calculation using 4 possible linear MHD stability codes (ILSA, KINX, MARS, MARS-F). After execution of the stability code is completed, plotting of the radial component of the displacement vector eigenfunction in the plasma domain is shown (real and imaginary parts). In case multiple toroidal mode numbers are set (ILSA or KINX), one plot window per each toroidal eigenmode is returned. A Copy in EPS format of each window is stored on the path defined by Kepler variable path

The Multiple Tab display window will also display the output flag of the code execution i.e. if the output is valid and the result can be used or not. The plasma bundle, on exit, is updated with the MHD cpo from the stability code.

4.2.4. Finalize

Composite actor to wrap up the final plasma bundle, with the equilibrium IDS containing 3 occurrences and one occurrence of the MHD IDS.

N.B. Only a single time slice of equilibrium and MHD IDSs is written, the remaining plasma bundle IDSs are written “as is” (whatever time slices).

4.3. Actors involved

Name

Location

Description

Check_Device

INITIALIZATION

Checks if the device Kepler
variable coincides with the environment
variable TOKAMAKNAME. If not the run stops.

SELECT_TIME_CORE/EQ

INITIALIZATION

Selects time slice of IDSs matching/closest
to the requested time in time Kepler variable

Check Coreprof/Equil Time and Flag

INITIALIZATION

Checks the output_flag of the
input IDSs to know if they are valid and
prints the actual time stamp retrived
from both IDSs (if time = -1 and
output_flag is negative then the IDS
is not valid). If the equilibrium is
considered invalid a message in displayed
on the Multi Tab Display window and
workflow execution is stopped. If the
core_profile is considered invalid a
message is displayed on the Multi Tab
Display window but the workflow will
continue since some of the MHD codes
handle plasma density internally as code
parameter and their execution is not affected.

Cutoff

FixedBndCode

Performs the cut-off of the input
equilibrium if requested and
provided the input CPO has a poloidal
flux (Psi) mapping i.e. Psi(R,Z). If not
present then workflow execution stops and a
message is displayed on the Multi Tab
Display window. A plot with the
original (in blue) and cut equilibrium
(in green) is shown when cut_off: yes
A plot with just the original (in
blue) equilibrium is shown when cut_off : no
NOTE: A useful trick to STOP
the workflow execution*-> when a
Python plot window is shown, Press the STOP
button on the Kepler GUI before closing
the plot window. This ensures workflow
execution is stopped since Kepler is
waiting for Python process to proceed.

Fixbndequil

FixedBndCode

Selects from a pool of 3 equilibrium
codes the one to launch according to
the value of the Kepler variable eqcode

Caxe

FixedBndCode

The CAXE code.
It can operate jointly with KINX only.

Chease

FixedBndCode

The CHEASE code.
It can operate jointly with ILSA, MARS
and MARS-F

Helena

FixedBndCode

The HELENA code.
It can operate jointly with ILSA, MARS
and MARS-F

Visual

FixedBndCode

Visualize the resulting equilibrium.
A Copy in EPS format is stored on the path
defined by Kepler variable %BLUE%path

Ilsa

StabCode

The ILSA code suite.
At the moment only the MISHKA1 kernel
(ideal incompressible MHD) is active

Kinx

StabCode

The KINX code.

Marsgw

StabCode

The MARS code

Marsf

StabCode

The MARS-F code

PLOT_EIGENFUNCTION

StabCode

Visualize the real and imaginary
eigenfunction components. In case
multiple toroidal mode numbers are set
(ILSA or KINX), one plot window per each
toroidal eigenmode is returned. A Copy in
EPS format of each window is stored on
the path defined by Kepler variable path

4.4. Setting up Workflow and Actor parameters

4.4.1. Setting workflow parameters

The workflow has basic settings in order to work.

  • shot : the shot number on the user database (or from another user) where to read the reference equilibrium from (shot/run_in pair)

  • run_in : the run number where the reference equilibrium is (shot/run_in pair)

  • run_work : placeholder run for the temporary Kepler IDSs

  • run_out : run number where the final results of the run will be stored (user running the workflow/shot/run_out). Since the input equilibrium can be a reconstruction that goes beyond the separatrix, 3 occurrences of the equilibrium are saved (original eq., cut equilibrium inside separatrix and corresponding high resolution equilibrium).

  • user : username. Reading from someone else database is possible but the run_out will naturally be written to personal database only.

  • device : device database where the input reference data is. MUST BE the same as env variable TOKAMAKNAME

  • time : time slice (in equilibrium IDS) to be analysed in case the input shot/run_in contains many time slices.

  • path : temporary folder where to dump the plots generated. Also used to store output files (used by HELENA/ILSA only)

  • cut_eq :

    • yes : cut the input equilibrium (necessary if high resolution equilibrium code cannot handle separatrix plasma equilibria)

    • no : input equilibrium is used “as is”.

  • cut_off : float ]0,1], specifies the percentage of the separatrix flux that will define the poloidal flux of the new plasma boundary.

  • eqcode : chease/caxe/helena. The equilibrium code to be used

  • stabcode : ilsa/kinx/marsgw/marsf. The MHD stability code to be used

The user can always prevent the workflow from proceeding to the calculation of the high resolution equilibrium after the cut-off stage by Pressing the STOP button in Kepler GUI before closing the plot window with the summary of the equilibrium.

4.4.2. Setting actor parameters

Actor parameters are set on the actors themselves (not passed by the workflow). To access the actors codeparam the easiest route is to :

  1. Click on “Outline” Tab (below the “Pause” button)

  2. Type the name of the actor and press “Search” (or Enter)

  3. On the final item in the chain of the actor composite, right click and press “Configure”. A pop-up panel appears

  4. Click on “Edit Code Parameters” and a new window appears

  5. Edit the code parameters and Press “Save & Exit”

  6. Press “Commit” and setting is completed

4.5. EQSTABIL Tutorial

Tutorial on using EQSTABIL workflow is available in PDF.